#include <def.h>
Public Attributes | |
| int | noGnu |
| Flag: TRUE turns GnuPlot animation off. | |
| int | noMeasurements |
| int | wait |
| Flag: TRUE for waiting after each iteration. | |
| int | usesig |
| Flag: TRUE for using variances from datafile. | |
| int | integrator |
| Integrator selection. | |
| int | stiff |
| int | nowait |
| Flag: TRUE to prevent waiting after last iteration. | |
| int | reg |
| Flag: TRUE for turning automatic regularisation on. | |
| int | simInit |
| Flag: TRUE for using simulation based data for initialisation. | |
| int | nodamp |
| Flag: TRUE for suppress damping. | |
| long | npar |
| Number of parameters. | |
| long | maxit |
| Maximal number of iterations. | |
| long | nIter |
| Iteration counter. | |
| int | nrExp |
| Number of experiments. | |
| int * | doP |
| Fix and local parameters definition vector. | |
| double ** | covar |
| Covariance matrix of parameters. | |
| double | chisq |
| Current chi-square. | |
| double | eps |
| Integration accuracy. | |
| long | rkqs_ign |
| Controls the integration of the variational differential equations. | |
| int | maxstp |
| Maximal number of integration steps (Runge-Kutta). | |
| double | minimp |
| Minimal improvement of parameters. | |
| double | elastic |
| Factor for weakening the continuity constraints. | |
| double | epsilon |
| double | lambda |
| double | dt |
| Sampling for simit. | |
| double | sig |
| Relative Gaussian for simulations. | |
| double | pert |
| Perturbation of the simulated initial guess in %. | |
| int * | y0fix |
| Fix initial values. | |
| double | wquer |
| Controls damping. | |
| FILE ** | gnuFp |
| File pointer vector for GnuPlot animation. | |
| long | ngnu |
| Number of GnuPlot windows. | |
| long | gnuindex |
| Index of the current GnuPlot window. | |
| long | fitdim |
| int | initSpline |
| Flag: TRUE if splines should be initialised. | |
| int | fitConverged |
| 1 if fit is converged, 0 else | |
| double | cond |
| double | Lambda |
| int | silent |
| int | strategy |
| int | minimiser |
| int | faktorLexist |
| double * | faktorL |
Definition at line 199 of file def.h.
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Current chi-square.
Definition at line 244 of file def.h. Referenced by dampIt(). |
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Condition number of the liniearised system to be solved |
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Covariance matrix of parameters. Matrix of dimension:
Definition at line 242 of file def.h. Referenced by outFit(). |
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Fix and local parameters definition vector.
TRUE : Fit parameter Vector of dimension:
Definition at line 237 of file def.h. Referenced by initialise(), mexFunction(), Norm(), parseopts(), and tabulateValues(). |
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Sampling for simit.
Definition at line 261 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Factor for weakening the continuity constraints.
Definition at line 257 of file def.h. Referenced by condense(), decondense(), mexFunction(), and parseopts(). |
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Integration accuracy.
Definition at line 246 of file def.h. Referenced by mexFunction(), parseopts(), and tabulateValues(). |
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Definition at line 258 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Definition at line 312 of file def.h. Referenced by parseopts(). |
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Definition at line 311 of file def.h. Referenced by parseopts(). |
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1 if fit is converged, 0 else
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Total number of fitted variables, needed for the covariance matrix |
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File pointer vector for GnuPlot animation.
Definition at line 280 of file def.h. Referenced by freeMem(), mexFunction(), and parseopts(). |
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Index of the current GnuPlot window.
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Flag: TRUE if splines should be initialised.
Definition at line 290 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Integrator selection.
Definition at line 210 of file def.h. Referenced by mexFunction(), parseopts(), and tabulateValues(). |
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Actual damping parameter (not to be confused with lambda) |
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Definition at line 259 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Maximal number of iterations.
Definition at line 224 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Maximal number of integration steps (Runge-Kutta).
Definition at line 250 of file def.h. Referenced by integrateRK(), mexFunction(), parseopts(), and tabulateValues(). |
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Definition at line 309 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Minimal improvement of parameters.
Definition at line 252 of file def.h. Referenced by fitIt(), mexFunction(), and parseopts(). |
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Number of GnuPlot windows.
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Iteration counter.
Definition at line 226 of file def.h. Referenced by globOpt(). |
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Flag: TRUE for suppress damping.
Definition at line 219 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Flag: TRUE turns GnuPlot animation off.
Definition at line 203 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Definition at line 204 of file def.h. Referenced by mexFunction(), parseopts(), and setMesh(). |
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Flag: TRUE to prevent waiting after last iteration.
Definition at line 213 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Number of parameters.
Definition at line 222 of file def.h. Referenced by call_odessa(), computeRight(), condense(), decondense(), freeMem(), initialise(), intODE(), mexFunction(), Norm(), outFit(), parseopts(), solvLin(), subIt(), and tabulateValues(). |
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Number of experiments.
Definition at line 228 of file def.h. Referenced by condense(), decondense(), fitIt(), fitness(), freeMem(), globOpt(), initialise(), main(), mexFunction(), Norm(), outFit(), parseopts(), setupGnuFp(), solvLin(), and subIt(). |
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Perturbation of the simulated initial guess in %.
Definition at line 265 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Flag: TRUE for turning automatic regularisation on.
Definition at line 215 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Controls the integration of the variational differential equations.
Definition at line 248 of file def.h. Referenced by tabulateValues(). |
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Relative Gaussian for simulations.
Definition at line 263 of file def.h. Referenced by mexFunction(), outSimit(), and parseopts(). |
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Relaxiation Parameter Definition at line 303 of file def.h. Referenced by dampIt(), mexFunction(), and parseopts(). |
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Flag: TRUE for using simulation based data for initialisation.
Definition at line 217 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Definition at line 211 of file def.h. Referenced by mexFunction(), parseopts(), and tabulateValues(). |
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if silent=1 no shell output is printed Definition at line 307 of file def.h. Referenced by outFit(), and parseopts(). |
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Flag: TRUE for using variances from datafile.
Definition at line 208 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Flag: TRUE for waiting after each iteration.
Definition at line 206 of file def.h. Referenced by mexFunction(), and parseopts(). |
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Controls damping.
Definition at line 276 of file def.h. Referenced by dampIt(), mexFunction(), and parseopts(). |
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Fix initial values.
TRUE : Fit initial value Vector of dimension:
Definition at line 273 of file def.h. Referenced by decondense(), fitness(), outFit(), parseopts(), and solvLin(). |
1.4.6